Skills Portal

Explore our comprehensive collection of AI agent skills. Detailed instructions, specialized workflows, and ready-to-use prompts.

Total Skills: 208

Design Skills

🌐

Domain Name Brainstormer

Generate creative domain name ideas for your new projects.

PROMPT
Use the `domain-name-brainstormer` skill to suggest names.
🕵️

Competitive Ads Extractor

Extract and analyze ads from competitors for marketing insights.

PROMPT
Use the `competitive-ads-extractor` skill to check ads.
🎨

Imagen AI

Generate minimalist icons and graphics using AI image generation models.

PROMPT
Use `imagen` to generate an app icon.
💻

Frontend Design

Design modern and interactive user interfaces using web technologies.

PROMPT
Use `frontend-design` to design a login page.
🖼️

Canvas Design

Create balanced and minimalist posters and graphic designs.

PROMPT
Use `canvas-design` to create a minimalist poster.
📏

Brand Guidelines

Apply official brand visual styles and identities.

PROMPT
Please use the `brand-guidelines` skill to adjust this design.
🎨

Algorithmic Arthot

Creative tools for generative art and algorithmic designs.

PROMPT
Please use the `algorithmic-art` skill to create a piece of art.

Productivity Skills

👔

Tailored Resume Generator

Create customized resumes based on job descriptions and user experience.

PROMPT
Use `tailored-resume-generator` to adjust your resume.
🎟️

Raffle Winner Picker

Select raffle winners randomly and fairly from a list of participants.

PROMPT
Use `raffle-winner-picker` to select 3 winners.
🗣️

Meeting Insights Analyzer

Analyze meeting minutes and extract key points and decisions made.

PROMPT
Use `meeting-insights-analyzer` to summarize a meeting.
🤝

Lead Research Assistant

Identify potential customers and collect contact information and key data.

PROMPT
Use `lead-research-assistant` to research companies.
🧾

Invoice Organizer

Extract data from invoices and organize them into orderly records.

PROMPT
Use the `invoice-organizer` skill to process receipts.
📁

File Organizer

Automatically classify and organize files based on their type and content.

PROMPT
Use the `file-organizer` skill to organize folders.
📚

Content Research Writer

Conduct in-depth research on topics and write high-quality content drafts.

PROMPT
Use the `content-research-writer` skill to write an article.
📚

Markdown to EPUBnew

Convert Markdown files into professional EPUB e-books with a table of contents.

PROMPT
Use `markdown-to-epub` to convert your notes.
✉️

Gmail

Search emails for invoices and mark them as 'Important'.

PROMPT
Use `gmail` to search for last month's invoices.
🗓️

Google Calendar

Check schedules and appointments and find available time slots.

PROMPT
Use `google-calendar` to check tomorrow's schedule.
☁️

Google Drive

Search Drive files and organize them into specific folders.

PROMPT
Use `google-drive` to search for reports.
📽️

Google Slides

Read presentations, extract slide titles, and check speaker notes.

PROMPT
Use `google-slides` to check presentation notes.
📉

Google Sheets

Read spreadsheets and extract budget data to generate summaries.

PROMPT
Use `google-sheets` to read the Q4 budget.
📝

Google Docs

Create new documents and outline code migrations or project proposals.

PROMPT
Use `google-docs` to create a project proposal.
💬

Google Chat

Manage Google Chat spaces and send project update messages.

PROMPT
Use `google-chat` to send an update message.
📖

Outline Wiki

Search Wiki documents and summarize core steps in deployment guides.

PROMPT
Use `outline` to search deployment guides.
🔬

Deep Researchhot

Conduct in-depth research on market competitors and future technology trends.

PROMPT
Use `deep-research` to research electric vehicle batteries.
📈

Excel Modeling

Create complex financial models using Excel formulas instead of hard-coding.

PROMPT
Use `xlsx` to create a financial model.
🚀

Ship-Learn-Nextnew

Transform notes into 5-stage practical action plans focused on implementation.

PROMPT
Use `ship-learn-next` to create an action plan.
📰

Article Extractornew

Extract pure text from web pages, filtering out ads and distracting elements.

PROMPT
Use `article-extractor` to extract an article's content.
🧵

Tapestrynew

Process URLs and extract content to create structured action plans.

PROMPT
Use `tapestry` to extract content from this video.
📊

CSV Data Summarizernew

Analyze CSV files and automatically generate statistical summaries and visual charts.

PROMPT
Use `csv-data-summarizer` to analyze sales data.
📊

PowerPoint Creator

Analyze visual styles and create professional presentations with image previews.

PROMPT
Use the `pptx` skill to create a presentation.
📂

PDF Processor

Extract data from multiple PDFs and convert them into spreadsheets.

PROMPT
Use the `pdf` skill to extract data from invoices.
📢

Internal Comms

Write professional work summaries and reports using structured templates.

PROMPT
Use `internal-comms` to write a weekly summary.
📄

DOCX Editor

Precise editing of Word documents with change tracking at the XML level.

PROMPT
Use the `docx` skill to modify a file.
✍️

Doc Co-authoring

Guide for writing complex technical and structural documents.

PROMPT
Please use `doc-coauthoring` to help me write a document.
📽️

Reveal.js Slidesnew

Create web-based presentations with multi-column layouts and charts.

PROMPT
Use `revealjs` to create a web presentation.

Development Skills

💾

Postgres DB

Query databases and perform statistical summarization of active data.

PROMPT
Use the `postgres` skill to query active users.
📌

PinMe IPFSnew

Deploy frontend projects to IPFS and obtain instant preview links.

PROMPT
Use `pinme` to deploy your project to IPFS.
🧪

PyPict Testing

Design test cases using pairwise testing principles to generate minimal test sets.

PROMPT
Use `pypict` to design test cases for a login feature.
🎨

Theme Factory

Showcase and apply custom visual themes for HTML pages and documents.

PROMPT
Use `theme-factory` to showcase available themes.
🧪

WebApp Testing

Write and execute automated test scenarios using Playwright to verify functionality.

PROMPT
Use `webapp-testing` to test the registration page.
🌐

Web Artifacts Builder

Build complete React dashboards with advanced UI components and charts.

PROMPT
Use `web-artifacts-builder` to build a dashboard.

Skill Creator

Plan and create new AI skills with custom workflows and code examples.

PROMPT
Use `skill-creator` to create a new skill.
🛠️

MCP Buildernew

Plan and build MCP servers and tool templates to connect databases.

PROMPT
Use `mcp-builder` to build a TypeScript server.

Media Skills

📺

YouTube Transcriptnew

Download and clean subtitles from YouTube videos for readability.

PROMPT
Use `youtube-transcript` to download video transcripts.
📥

Video Downloader

Download video files from various web links.

PROMPT
Use the `video-downloader` skill to download a video.
🪄

Image Enhancer

Improve image quality and clarity using AI technologies.

PROMPT
Use the `image-enhancer` skill to improve an image.
🎬

Slack GIF Creator

Create custom GIF animations with easing effects and compression.

PROMPT
Use `slack-gif-creator` to create a loading effect.

Agent Superpowers

Writing Skills

Improve writing quality, style, and clarity using advanced agent techniques.

PROMPT
Use `writing-skills` to refine this text.
📝

Writing Plansnew

Formulate detailed and structured action plans to achieve complex project goals.

PROMPT
Use `writing-plans` to create a roadmap.

Verification Before Completion

Perform a final and thorough check of the results before marking the task as 'complete'.

PROMPT
Use `verification-before-completion` to verify work.

Using Superpowers

Activate and utilize advanced agent capabilities to solve complex problems.

PROMPT
Use `using-superpowers` to solve the task.
🌿

Using Git Worktrees

Manage multiple branches simultaneously using Git's worktrees feature.

PROMPT
Use `using-git-worktrees` to manage branches.
🧪

Test Driven Developmenthot

Write tests before the actual code to ensure functionality and quality.

PROMPT
Use `test-driven-development` to build a new feature.
🐛

Systematic Debugging

Use a systematic approach to identify and correct complex code errors.

PROMPT
Use `systematic-debugging` to solve a code issue.
👨‍💻

Subagent Driven Developmenthot

Delegate complex programming and research tasks to specialized AI sub-agents.

PROMPT
Use `subagent-driven-development` to increase productivity.
📤

Requesting Code Review

Prepare and submit code for review by peers to ensure quality.

PROMPT
Use `requesting-code-review` to request a review.
📥

Receiving Code Review

Process comments and feedback from code reviewers and apply improvements.

PROMPT
Use `receiving-code-review` to process comments.
🏁

Finishing Development Branch

Close development branch, merge changes, and clean up workspace.

PROMPT
Use `finishing-a-development-branch` to close this branch.
🚀

Executing Plans

Follow and execute pre-defined action steps with precision and professionalism.

PROMPT
Use `executing-plans` to start action steps.
🤖

Dispatching Parallel Agents

Distribute complex tasks across multiple AI agents working simultaneously.

PROMPT
Use `dispatching-parallel-agents` to increase speed.
🧠

Brainstorming

Generate creative ideas and expand thinking horizons with AI agents.

PROMPT
Use `brainstorming` to think about product features.

Science Skills

🧪

ZINC Database

Curated database of commercial compounds for virtual screening.

PROMPT
Use `zinc-database` to search for compounds for docking.
🧪

Zarr Python

Python implementation of chunked, compressed, N-dimensional arrays for scientific data.

PROMPT
Use `zarr-python` to manage massive arrays.
🧪

USPTO Database

Access to the United States Patent and Trademark Office database.

PROMPT
Use `uspto-database` to search for patents.
🧪

UniProt Database

Comprehensive, high-quality, and free resource for protein sequences and functional information.

PROMPT
Use `uniprot-database` to search for proteins.
🧪

PyTorch Geo

Deep learning library for graphs built on PyTorch for structured and unstructured data.

PROMPT
Use `torch_geometric` to build a GNN.
🧪

Template Skill

Example skill providing templates for building new skills.

PROMPT
Use `template-skill` to build a new skill.
🧪

STRING Database

Database of known and predicted protein-protein interactions.

PROMPT
Use `string-database` to find protein interactions.
🧪

Skill Share

Comprehensive tools for discovering and sharing scientific skills.

PROMPT
Use `skill-share` to discover new skills.
🧪

Reactome Database

Open-source, curated database of human biological pathways.

PROMPT
Use `reactome-database` to search for pathways.
🧪

PubMed Database

36M+ citations for biomedical literature from MEDLINE and life science journals.

PROMPT
Use `pubmed-database` to search medical literature.
🧪

PubChem Database

The world's largest repository of open chemical information.

PROMPT
Use `pubchem-database` to search for compounds.
🧪

Protocols.io Integration

Tools for accessing and sharing scientific protocols from the Protocols.io platform.

PROMPT
Use `protocolsio-integration` to search for a protocol.
🧪

PDB Database

Worldwide repository for experimental data on 3D structures of biological macromolecules.

PROMPT
Use `pdb-database` to search for PDB structures.
🧪

Open Targets

Platform for drug target identification using genomic and clinical data.

PROMPT
Use `opentargets-database` to find drug targets.
🧪

OpenAlex Database

An open and comprehensive index of scholarly papers, authors, and institutions.

PROMPT
Use `openalex-database` to search for authors.
🧪

Offer K Dense Web

Comprehensive tools for processing dense web data and scientific information.

PROMPT
Use `offer-k-dense-web` for information extraction.
🧪

MATLAB

Numerical computing environment and language for scientific computing.

PROMPT
Use `matlab` for matrix computations.
🧪

LangSmith Fetch

Comprehensive tools for fetching data from LangSmith for LLM optimization.

PROMPT
Use `langsmith-fetch` to retrieve trace data.
🧪

LabArchive Integration

Integration with electronic lab notebooks for research data management.

PROMPT
Use `labarchive-integration` to manage notes.
🧪

Gene Database

Unified access to genomic information and functional annotations from multiple sources.

PROMPT
Use `gene-database` to search for gene functions.
🧪

ETE Toolkit

Python framework for phylogenetic tree analysis and visualization.

PROMPT
Use `etetoolkit` for phylogenetic tree analysis.
🧪

ESM Model

Protein language models for sequence analysis and structure prediction.

PROMPT
Use `esm` for protein sequence analysis.
🧪

Document Skills

Automated documentation and indexing of agent skills for scientific projects.

PROMPT
Use `document-skills` to generate skill docs.
🧪

Dev Growth Analysis

Analysis of developer activity and ecosystem growth within scientific software.

PROMPT
Use `developer-growth-analysis` to check activity.
🧪

DataCommons Client

Programmatic access to the DataCommons knowledge graph for public data analysis.

PROMPT
Use `datacommons-client` to query public data.
🧪

Connect Apps

Integration of applications within the lab data ecosystem for workflow optimization.

PROMPT
Use `connect-apps` to link software tools.
🧪

Connect Integration

Comprehensive tools and resources for laboratory data connectivity and integration.

PROMPT
Use `connect` to integrate lab data.
🧪

Cirq

Python library for designing and optimizing quantum circuits on NISQ processors.

PROMPT
Use `cirq` to program a quantum circuit.
🧪

Changelog Gen

Automatically generate professional changelogs for scientific projects.

PROMPT
Use `changelog-generator` to summarize updates.
🧪

BioRxiv DB

Comprehensive tools and resources for accessing BioRxiv preprints.

PROMPT
Use `biorxiv-database` to search for preprints.
🧪

Stat Analysis

Comprehensive statistical testing, power analysis, and experimental design.

PROMPT
Use `statistical-analysis` to perform a t-test.
🧪

Scientific Writing

Comprehensive toolkit for writing and structuring scientific research papers.

PROMPT
Use `scientific-writing` to draft a paper.
🧪

Sci Visualization

Best practices and templates for creating publication-quality scientific figures.

PROMPT
Use `scientific-visualization` to create figures.
🧪

Sci Critical Thinking

Tools and approaches for rigorous scientific reasoning and evaluation.

PROMPT
Use `scientific-critical-thinking` to assess limitations.
🧪

Sci Brainstorming

Conversational partner for generating novel research ideas and creative approaches.

PROMPT
Use `scientific-brainstorming` to explore new directions.
🧪

Peer Review

Comprehensive toolkit for conducting high-quality scientific peer reviews.

PROMPT
Use `peer-review` to evaluate a research manuscript.
🧪

Literature Review

Systematic literature search and review toolkit with support for multiple databases.

PROMPT
Use `literature-review` to summarize recent studies.
🧪

Hypothesis Gen

Structured frameworks for generating and evaluating scientific hypotheses.

PROMPT
Use `hypothesis-generation` to develop research questions.
🧪

EDA Toolkit

Comprehensive EDA toolkit with automated statistics and visualizations for any tabular dataset.

PROMPT
Use `exploratory-data-analysis` to analyze a table.
🧪

ISO 13485 Toolkit

Toolkit for preparing ISO 13485 certification documentation for medical device Quality Management Systems.

PROMPT
Use `iso-13485-certification` to prepare quality docs.
🧪

Scholar Evaluation

Apply the ScholarEval framework to systematically evaluate scholarly and research work.

PROMPT
Use `scholar-evaluation` to evaluate a research paper.
🧪

Research Lookup

Look up current research information using Perplexity Sonar Pro models.

PROMPT
Use `research-lookup` to search current research.
🧪

Research Grants

Write competitive research proposals for organizations like NSF, NIH, DOE, and DARPA.

PROMPT
Use `research-grants` to draft a proposal.
🧪

Get Resources

Detect available computational resources and generate recommendations for scientific tasks.

PROMPT
Use `get-available-resources` to check resources.
🧪

PyLabRobot

Hardware-agnostic, pure Python SDK for automated and autonomous laboratories.

PROMPT
Use `pylabrobot` to control lab hardware.
🧪

MarkItDown

Python utility for converting 20+ file formats to Markdown optimized for LLM processing.

PROMPT
Use `markitdown` to convert a PDF.
🧪

Venue Templates

Access comprehensive LaTeX templates and submission guidelines for major journals and conferences.

PROMPT
Use `venue-templates` for the Nature journal template.
🧪

Scientific Slides

Build slide decks and presentations for research talks using PowerPoint and LaTeX Beamer.

PROMPT
Use `scientific-slides` to build a presentation.
🧪

Sci Schematics

Create publication-quality scientific diagrams with smart iterative refinement.

PROMPT
Use `scientific-schematics` to create a diagram.
🧪

PPTX Posters

Create professional research posters using PowerPoint/HTML formats.

PROMPT
Use `pptx-posters` to design a research poster.
🧪

Perplexity Search

AI-powered web search using Perplexity models for real-time answers with citations.

PROMPT
Use `perplexity-search` to search the web.
🧪

Paper2Web

Transform academic papers into multiple promotional formats and websites.

PROMPT
Use `paper-2-web` to transform your paper.
🧪

Market Research Reports

Generate comprehensive market research reports in the style of top consulting firms.

PROMPT
Use `market-research-reports` to generate a report.
🧪

LaTeX Posters

Create professional research posters in LaTeX using advanced templates.

PROMPT
Use `latex-posters` to design a poster.
🧪

Scientific Image Gen

AI-powered image generation and editing for scientific illustrations and schematics.

PROMPT
Use `generate-image` to create an illustration.
🧪

Citation Management

Comprehensive citation management for academic research.

PROMPT
Use `citation-management` to organize references.
🧪

Hypogenic

Automated hypothesis generation and testing using large language models to accelerate scientific discovery.

PROMPT
Use `hypogenic` to generate scientific hypotheses.
🧪

Denario

Multiagent AI system for scientific research assistance that automates complete research workflows.

PROMPT
Use `denario` to automate research workflows.
🧪

BioMni

Autonomous biomedical AI agent framework for executing complex research tasks.

PROMPT
Use `biomni` for biomedical research.
🧪

scikit-bio

Python library for bioinformatics providing data structures and algorithms for biological analysis.

PROMPT
Use `scikit-bio` for biological sequence analysis.
🧪

FlowIO

Python library for reading and manipulating Flow Cytometry Standard (FCS) files.

PROMPT
Use `flowio` to process FCS files.
🧪

deepTools

Comprehensive suite of tools for exploring and visualizing next-generation sequencing (NGS) data.

PROMPT
Use `deeptools` for NGS data analysis.
🧪

Vaex

High-performance Python library for processing and visualizing massive tabular datasets.

PROMPT
Use `vaex` for massive dataset processing.
🧪

SymPy

Symbolic mathematics in Python for exact computation using mathematical symbols.

PROMPT
Use `sympy` to solve symbolic equations.
🧪

SimPy

Discrete-event simulation framework for modeling systems, processes, and queues.

PROMPT
Use `simpy` to model a simulation process.
🧪

Seaborn

Statistical data visualization with dataset-oriented interface and high-quality themes.

PROMPT
Use `seaborn` for visual statistical analysis.
🧪

Plotly

Interactive scientific and statistical data visualization library with 40+ chart types.

PROMPT
Use `plotly` to create interactive charts.
🧪

Polars

High-performance DataFrame library written in Rust for fast data manipulation.

PROMPT
Use `polars` for fast data processing.
🧪

NetworkX

Comprehensive toolkit for creating, analyzing, and visualizing complex networks and graphs.

PROMPT
Use `networkx` for network analysis.
🧪

Matplotlib

Comprehensive Python plotting library for static, animated, and interactive visualizations.

PROMPT
Use `matplotlib` to create plots.
🧪

GeoPandas

Python library extending pandas for working with geospatial vector data.

PROMPT
Use `geopandas` for geospatial data.
🧪

Dask

Parallel computing for larger-than-memory datasets with distributed DataFrames and Arrays.

PROMPT
Use `dask` for parallel computing.
🧪

FluidSim

Python framework for high-performance computational fluid dynamics (CFD) simulations.

PROMPT
Use `fluidsim` for fluid simulations.
🧪

Pymatgen

Python Materials Genomics (pymatgen) library for materials science computation and analysis.

PROMPT
Use `pymatgen` for material structure analysis.
🧪

COBRApy

Python package for constraint-based reconstruction and analysis (COBRA) of metabolic networks.

PROMPT
Use `cobrapy` for metabolic network analysis.
🧪

Astropy

Comprehensive Python library for astronomy and astrophysics for research and data analysis.

PROMPT
Use `astropy` for astronomical calculations.
🧪

UMAP

Python implementation of UMAP for dimensionality reduction and manifold learning.

PROMPT
Use `umap-learn` for dimensionality reduction.
🧪

Transformers

State-of-the-art machine learning models for NLP, computer vision, and multimodal tasks.

PROMPT
Use `transformers` to load a language model.
🧪

statsmodels

Statistical modeling and econometrics (OLS, GLM, ARIMA, hypothesis testing).

PROMPT
Use `statsmodels` for statistical analysis.
🧪

Stable Baselines3

PyTorch-based reinforcement learning library providing reliable implementations of RL algorithms.

PROMPT
Use `stable-baselines3` for reinforcement learning.
🧪

SHAP

Model interpretability and explainability using Shapley values from game theory.

PROMPT
Use `shap` to interpret model predictions.
🧪

scikit-survival

Survival analysis and time-to-event modeling with censored data.

PROMPT
Use `scikit-survival` for survival analysis.
🧪

scikit-learn

Industry-standard Python library for classical machine learning providing comprehensive tools.

PROMPT
Use `scikit-learn` to train a classifier.
🧪

QuTiP

Python toolbox for simulating and analyzing quantum mechanical systems.

PROMPT
Use `qutip` to simulate a quantum system.
🧪

Qiskit

Open-source quantum computing framework for building and optimizing quantum circuits.

PROMPT
Use `qiskit` to build a quantum circuit.
🧪

PennyLane

Python library for quantum computing, quantum machine learning, and quantum chemistry.

PROMPT
Use `pennylane` for quantum computing.
🧪

PyTorch Lightning

Deep learning framework that organizes PyTorch code to eliminate boilerplate.

PROMPT
Use `pytorch-lightning` for model training.
🧪

pymoo

Python framework for multi-objective optimization using evolutionary algorithms.

PROMPT
Use `pymoo` for multi-objective optimization.
🧪

PyMC

Comprehensive Python library for Bayesian statistical modeling and probabilistic programming.

PROMPT
Use `pymc` for Bayesian modeling.
🧪

PufferLib

High-performance reinforcement learning library with optimized model training.

PROMPT
Use `pufferlib` for reinforcement learning.
🧪

aeon

Python toolkit for time series machine learning, compatible with scikit-learn.

PROMPT
Use `aeon` for time series analysis.
🧪

Adaptyv

Cloud laboratory platform for automated protein testing and validation.

PROMPT
Use `adaptyv` for protein testing.
🧪

Neuropixels Analysis

Comprehensive toolkit for analyzing Neuropixels high-density neural recordings.

PROMPT
Use `neuropixels-analysis` for neural data analysis.
🧪

Treatment Plans

Generate focused medical treatment plans in LaTeX/PDF format for clinical specialties.

PROMPT
Use `treatment-plans` to generate a treatment plan.
🧪

Clinical Reports

Write comprehensive clinical reports following established guidelines and standards.

PROMPT
Use the `clinical-reports` skill to write a report.
🧪

Clinical Decision Support

Generate professional clinical decision support documents for pharmaceutical research.

PROMPT
Use `clinical-decision-support` to generate a document.
🧪

PyHealth

Healthcare AI toolkit for developing and testing ML models with clinical data.

PROMPT
Use `pyhealth` to build a clinical prediction model.
🧪

NeuroKit2

Comprehensive biosignal processing toolkit for ECG, EEG, EDA, and more using Python.

PROMPT
Use `neurokit2` to process ECG data.
🧪

pydicom

Pure Python package for working with DICOM (Digital Imaging and Communications in Medicine) files.

PROMPT
Use `pydicom` to read DICOM files.
🧪

PathML

Comprehensive computational pathology toolkit for image analysis and tissue segmentation.

PROMPT
Use `pathml` for tissue analysis.
🧪

histolab

Digital pathology toolkit for whole slide image (WSI) processing and analysis.

PROMPT
Use `histolab` to process slide images.
🧪

pyOpenMS

Comprehensive mass spectrometry data analysis for proteomics and metabolomics.

PROMPT
Use `pyopenms` for proteomics data analysis.
🧪

matchms

Processing and similarity matching of mass spectrometry data with multiple file formats support.

PROMPT
Use `matchms` to process mass spectrometry data.
🧪

TorchDrug

PyTorch-based machine learning platform for drug discovery with GNN models for property prediction.

PROMPT
Use `torchdrug` for molecular modeling with GNNs.
🧪

Rowan

Cloud-based quantum chemistry platform with Python API for computational chemistry workflows.

PROMPT
Use `rowan` for quantum chemical calculations.
🧪

RDKit

Open-source cheminformatics toolkit for molecular informatics and drug discovery.

PROMPT
Use `rdkit` to process chemical structures.
🧪

PyTDC

Python library providing access to Therapeutics Data Commons (TDC) datasets and benchmarks for drug discovery.

PROMPT
Use `pytdc` to access drug discovery datasets.
🧪

molfeat

Python library providing 100+ molecular featurizers for converting molecules into numerical representations for ML.

PROMPT
Use `molfeat` for molecular featurization.
🧪

medchem

Python library for medicinal chemistry analysis and drug-likeness assessment.

PROMPT
Use `medchem` to assess drug-likeness.
🧪

DiffDock

State-of-the-art diffusion-based molecular docking method for predicting binding poses.

PROMPT
Use `diffdock` to predict binding poses.
🧪

DeepChem

Deep learning framework for molecular machine learning and drug discovery.

PROMPT
Use `deepchem` for drug discovery.
🧪

datamol

Python library for molecular manipulation built on RDKit with enhanced performance.

PROMPT
Use `datamol` to manipulate molecules.
🧪

Modal

Serverless cloud platform for running Python code, specialized for AI/ML workloads.

PROMPT
Use `modal` to run cloud computations.
🧪

LaminDB

Open-source data framework for biology that makes data queryable, traceable, and FAIR.

PROMPT
Use `lamindb` to manage biology data.
🧪

scvi-tools

Probabilistic deep learning models for single-cell omics analysis.

PROMPT
Use `scvi-tools` for omics data modeling.
🧪

Scanpy

Comprehensive Python toolkit for single-cell RNA-seq data analysis built on AnnData.

PROMPT
Use `scanpy` for single-cell analysis.
🧪

PyDESeq2

Python implementation of the DESeq2 method for differential gene expression analysis.

PROMPT
Use `pydeseq2` for differential expression analysis.
🧪

pysam

Read, write, and manipulate genomic data files (SAM/BAM/VCF) using Python.

PROMPT
Use `pysam` to process BAM files.
🧪

gtars

High-performance Rust toolkit for genomic interval analysis and fragment processing.

PROMPT
Use `gtars` for genomic interval analysis.
🧪

GeniML

Genomic interval machine learning toolkit providing methods for building ML models on BED files.

PROMPT
Use `geniml` to build genomic ML models.
🧪

gget

Command-line tool and Python package for efficient querying of genomic databases.

PROMPT
Use `gget` to query genomic databases.
🧪

CELLxGENE Census

Python package for querying and analyzing large-scale single-cell RNA-seq data.

PROMPT
Use `cellxgene-census` for single-cell data analysis.
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BioServices

Python library providing unified programmatic access to 40+ biological web services.

PROMPT
Use `bioservices` to access biological databases.
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Biopython

Comprehensive Python library for computational biology and bioinformatics.

PROMPT
Use `biopython` to process biological sequences.
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Arboreto

Python package for efficient gene regulatory network (GRN) inference from single-cell RNA-seq data.

PROMPT
Use `arboreto` for GRN inference.
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AnnData

Python package for handling annotated data matrices for single-cell genomics data.

PROMPT
Use `anndata` to process cell matrices.
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OMERO Integration

Toolkit for interacting with OMERO microscopy data management systems using Python.

PROMPT
Use `omero-integration` to manage microscopy images.
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LatchBio Integration

Integration with the Latch platform for building and executing bioinformatics workflows.

PROMPT
Use `latchbio-integration` to manage workflows.
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Opentrons Integration

Toolkit for creating and debugging lab automation protocols using Opentrons robots.

PROMPT
Use `opentrons-integration` for robot programming.
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DNAnexus Integration

Toolkit for working with the DNAnexus cloud for biomedical data analysis.

PROMPT
Use `dnanexus-integration` for genomics analysis.
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Benchling Integration

Toolkit for programmatic access to DNA sequences, samples, and lab notebooks.

PROMPT
Use `benchling-integration` to manage lab data.
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Metabolomics Workbench

Metabolomics data repository with processed studies and metabolite structures.

PROMPT
Use `metabolomics-workbench` for study searches.
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KEGG Database

Database integrating genomic, chemical, and systemic functional information.

PROMPT
Use `kegg` for pathway searches.
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Human Metabolome Database

Comprehensive database of human metabolites with chemical and biological data.

PROMPT
Use `hmdb-human-metabolome-database` for metabolite searches.
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GWAS Catalog

Catalog of published genome-wide association studies with SNP-trait associations.

PROMPT
Use `gwas-catalog` to search for trait associations.
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GEO Gene Expression Database

Public repository for high-throughput gene expression and functional genomics data.

PROMPT
Use `geo-gene-expression-omnibus` to find datasets.
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FDA Databases

Access regulatory data on drugs, medical devices, and food through openFDA.

PROMPT
Use `fda-databases` to search for drug adverse events.
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Ensembl Genome Browser

Database providing genomic annotations and sequences for 250+ vertebrate species.

PROMPT
Use `ensembl` for gene lookups.
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ENA Nucleotide Archive

Comprehensive public repository for nucleotide sequence data and metadata.

PROMPT
Use `ena-european-nucleotide-archive` for sequence searches.
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DrugBank Database

Comprehensive bioinformatics database containing detailed drug and drug target information.

PROMPT
Use `drugbank` for drug information.
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COSMIC Database

The world's largest database of somatic cancer mutations.

PROMPT
Use `cosmic` for cancer mutations.
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ClinicalTrials.gov

Comprehensive registry of clinical studies conducted worldwide.

PROMPT
Use `clinicaltrials-gov` to search clinical studies.
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ClinVar Database

NCBI's public archive of genomic variants and their clinical significance.

PROMPT
Use `clinvar` for genomic variants.
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ClinPGx Database

Clinical pharmacogenomics database providing gene-drug interactions and guidelines.

PROMPT
Use `clinpgx` for gene-drug interactions.
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ChEMBL Database

A manually curated database of bioactive molecules with drug-like properties.

PROMPT
Use `chembl` to search for a molecule.
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BRENDA Enzyme Database

The world's most comprehensive enzyme information system from scientific literature.

PROMPT
Use `brenda` for enzyme information.
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AlphaFold DB

Access 200M+ high-confidence protein structure predictions from DeepMind.

PROMPT
Use `alphafold-db` to search for a protein structure.
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